The Tiny Architects in Our Pipes

How Biofilm Reactors are Revolutionizing Wastewater Treatment

The Nitrogen Crisis in Our Waters

Algal bloom in water

Picture a river turning green, fish gasping for oxygen, and ecosystems collapsing—all because of invisible nitrogen compounds. As global populations surge and agriculture intensifies, ammonia-laden wastewater floods our environment, fueling toxic algal blooms and dead zones.

Traditional wastewater plants struggle to eliminate nitrogen efficiently, but a hybrid technology—the pure Moving Bed Biofilm Reactor-Membrane Bioreactor (MBBR-MBR)—holds a revolutionary solution. By harnessing microbial "architects" that build nitrogen-destroying biofilms, this system achieves remarkable efficiency.

At its heart lies two-step nitrification, a microbial ballet where bacteria sequentially convert ammonia to harmless nitrogen gas. Recent research reveals how specialized microbes collaborate in these reactors, offering a blueprint for sustainable water purification 2 4 .

Decoding Two-Step Nitrification: Nature's Nitrogen Cleanup Crew

The Microbial Relay Race

Nitrogen removal hinges on two bacterial teams passing chemical batons:

AOB Ammonia Oxidizers

These bacteria (e.g., Nitrosomonas) kickstart the process, oxidizing ammonia (NH₃) to nitrite (NO₂⁻). They thrive in oxygen-rich zones and are sensitive to environmental shifts.

NOB Nitrite Oxidizers

Bacteria like Nitrospira and Nitrobacter take the baton, converting nitrite to nitrate (NO₃⁻). Denitrifiers then transform nitrate into nitrogen gas (N₂), which escapes harmlessly into the air 7 .

In conventional systems, slow-growing NOB are often washed out. Biofilms solve this by anchoring them securely to plastic carriers, creating resilient microbial cities 6 .

Why Biofilms? The Ultimate Microbial Metropolis

Biofilms are slimy, structured communities where bacteria embed themselves in self-produced glue (EPS). In MBBR-MBR systems, plastic carriers (e.g., EvU-Pearls®) provide scaffolding for these communities. The synergy is genius:

  • Biofilm 3–6× higher
  • Hosts slow-growing nitrifiers (AOB/NOB) at densities than in suspended sludge.
  • Membrane
  • Filters out purified water, retaining all biomass within the reactor 4 .

This hybrid design achieves >95% ammonia removal even under shock loads 2 .

The Nitrogen Removal Process

Step 1: Ammonia Oxidation

NH3 + O2 → NO2- (by AOB)

Step 2: Nitrite Oxidation

NO2- + O2 → NO3- (by NOB)

Step 3: Denitrification

NO3- → N2 gas (by denitrifiers)

Inside the Landmark Experiment: Microbial Diversity Meets Kinetic Mastery

The Setup: A Reactor with a Microbial Census

A groundbreaking 2015 study dissected a pure MBBR-MBR treating urban wastewater. The reactor operated under:

  • Hydraulic Retention Time (HRT): 9.5 hours
  • Carrier Filling Ratio: 25–30% of volume (600 m²/m³ surface area)
  • Aeration: Continuous oxygen supply (2–6 mg/L) 2 4 .

Researchers tracked microbial populations using pyrosequencing—a DNA method that quantifies bacterial groups—and measured kinetic parameters governing nitrification rates.

Key Findings: Who Lives in the Biofilm?

Table 1: Microbial Populations in Suspended Sludge vs. Biofilm
Microbial Group Suspended Sludge (%) Biofilm (%) Role
Ammonia Oxidizers (AOB) 5 18 Converts NH₃ → NO₂⁻
Nitrite Oxidizers (NOB) 1 5 Converts NO₂⁻ → NO₃⁻
Denitrifiers (DeNB) 3 2 Converts NO₃⁻ → N₂ gas

The biofilm was a NOB stronghold, hosting 5× more nitrite oxidizers than suspended sludge. Nitrospira—a high-affinity "strategist"—dominated, efficiently scavenging low nitrite concentrations 7 .

Kinetic Secrets: Why Nitrospira Outcompetes Nitrobacter

Table 2: Kinetic Parameters of Key Nitrite-Oxidizing Bacteria
NOB Species Half-Saturation Constant (Km, μM) Maximum Activity (Vmax) Niche Advantage
Nitrospira spp. 9–27 18–48 μmol/mg protein/h Thrives in low-NO₂⁻ environments
Nitrobacter spp. 49–544 64–164 μmol/mg protein/h Wins at high NO₂⁻ concentrations

Nitrospira's ultra-low Km allows it to consume nitrite efficiently even when scarce, making it ideal for biofilm systems where substrates diffuse slowly. Nitrobacter, in contrast, needs nitrite floods 7 .

Performance: The Numbers Speak

  • Total Nitrogen Removal: 71.8% ± 16%
  • Ammonia Oxidation Rate: Boosted by biofilm AOB activity (kinetic parameter μm,A = 0.7169 h⁻¹) 4 .

The biofilm's stratified layers enabled cross-feeding: AOB produced nitrite for NOB, while denitrifiers in anoxic micro-zones consumed nitrate .

The Scientist's Toolkit: Essential Reagents for Biofilm Nitrification

Table 3: Key Reagents and Their Roles in MBBR-MBR Research
Reagent/Equipment Function Why It Matters
EvU-Pearl® Carriers Plastic biofilm scaffolds (600 m²/m³) Creates "cities" for microbial colonization
Pyrosequencing (e.g., 454 Roche) DNA profiling of AOB/NOB Reveals microbial diversity and abundance
DO Probes (Oxymax COS61D) Monitors dissolved oxygen Optimizes aeration for AOB/NOB activity
Mineral Media Contains NaNO₂, trace metals Feeds nitrifiers in lab-scale simulations
Ion Chromatography Measures NO₂⁻/NO₃⁻ concentrations Quantifies nitrification efficiency
Lab equipment
Biofilm Carriers

Plastic scaffolds that provide surface area for microbial colonization.

DNA sequencing
DNA Sequencing

Identifying microbial populations through genetic analysis.

Water analysis
Water Analysis

Measuring nitrogen compounds to assess treatment efficiency.

The Future: Engineering Smarter Microbial Cities

Intermittent Aeration and Comammox

Recent studies show intermittent aeration boosts comammox bacteria—newly discovered microbes that perform both ammonia and nitrite oxidation in one cell. In MBBR-MBRs, reducing aeration (R = tnon-aerated/taerated = 1/2) increased comammox abundance by 22%, slashing energy use .

Tackling Real-World Challenges

Antibiotic Resistance

Sulfonamides in wastewater inhibit bacteria, but biofilms shield nitrifiers. Acinetobacter spp. in biofilms even degrade these drugs 1 .

Cold Climates

Nitrotoga arctica, a cold-loving NOB (Km = 58 μM at 17°C), could optimize reactors in chilly regions 7 .

Conclusion: The Biofilm Revolution

The pure MBBR-MBR is more than a treatment plant—it's a microbial metropolis engineered for efficiency. By understanding the kinetics and ecology of its inhabitants—AOB, NOB, and denitrifiers—we can design systems that turn toxic ammonia into harmless nitrogen gas with unprecedented precision. As research unlocks secrets of comammox and cold-adapted strains, this technology promises cleaner waters for a growing planet. In the battle against nitrogen pollution, the smallest architects may be our greatest allies.


"In biofilms, microbes don't just survive; they thrive, collaborate, and clean our world—one molecule at a time."

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